- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: R.297
- Chain D: R.297
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Salt bridges: D:R.297, A:R.297
SO4.10: 2 residues within 4Å:- Chain B: R.297
- Chain C: R.297
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Salt bridges: C:R.297, B:R.297
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 7 residues within 4Å:- Chain A: I.248, N.275, G.301, Q.303
- Chain B: K.12, T.72
- Ligands: AZA.1
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:T.72, A:N.275, A:Q.303
- Water bridges: B:K.12, B:D.73
OXY.4: 6 residues within 4Å:- Chain A: T.72
- Chain B: I.248, N.275, G.301, Q.303
- Ligands: AZA.5
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.275, B:G.301, B:Q.303, A:T.72
- Water bridges: A:K.12
OXY.11: 7 residues within 4Å:- Chain C: I.248, N.275, G.301, Q.303
- Chain D: K.12, T.72
- Ligands: AZA.9
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:N.275, C:Q.303, D:T.72
- Water bridges: D:K.12, D:D.73
OXY.12: 6 residues within 4Å:- Chain C: T.72
- Chain D: I.248, N.275, G.301, Q.303
- Ligands: AZA.13
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:T.72, D:N.275, D:G.301, D:Q.303
- Water bridges: C:K.12
- 2 x K: POTASSIUM ION(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 8 residues within 4Å:- Chain B: P.120, E.145, Y.146, A.147, L.170, A.229, E.230, R.233
No protein-ligand interaction detected (PLIP)EDO.8: 9 residues within 4Å:- Chain B: R.39, D.40, H.41, I.42, L.43, F.121, E.122, T.123, F.139
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:R.39, B:H.41, B:I.42, B:L.43, B:L.43
- Water bridges: B:R.39, B:R.39, B:R.39, B:D.40, B:F.121
EDO.15: 8 residues within 4Å:- Chain D: P.120, E.145, Y.146, A.147, L.170, A.229, E.230, R.233
No protein-ligand interaction detected (PLIP)EDO.16: 9 residues within 4Å:- Chain D: R.39, D.40, H.41, I.42, L.43, F.121, E.122, T.123, F.139
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:R.39, D:H.41, D:I.42, D:L.43, D:L.43
- Water bridges: D:R.39, D:R.39, D:R.39, D:D.40, D:F.121
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hibi, T. et al., Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase. to be published
- Release Date
- 2019-01-02
- Peptides
- Uric acid degradation bifunctional protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hibi, T. et al., Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase. to be published
- Release Date
- 2019-01-02
- Peptides
- Uric acid degradation bifunctional protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B