SMTL ID : 5z28.1

AtVAL2 PHD-Like domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.5, C.10, C.34, C.37 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.10, A:C.34, A:C.37 ZN.2: 4 residues within 4Å: Chain A: C.47, H.51, H.68, C.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.47, A:H.51, A:H.68, A:C.71 ZN.3: 4 residues within 4Å: Chain A: C.60, C.63, C.88, C.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.60, A:C.63, A:C.88, A:C.91 ZN.5: 4 residues within 4Å: Chain B: C.60, C.63, C.88, C.91 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.60, B:C.63, B:C.88, B:C.91 ZN.6: 4 residues within 4Å: Chain B: C.47, H.51, H.68, C.71 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.47, B:H.51, B:H.68, B:C.71 ZN.7: 4 residues within 4Å: Chain B: C.5, C.10, C.34, C.37 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.5, B:C.10, B:C.34, B:C.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: Y.41, S.44, I.45, F.46, C.47, E.48, A.73, S.74, M.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.41, A:F.46, A:C.47, A:E.48, A:E.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, B.X. et al., Crystal structure of AtVAL12 PHD-Like domain. To Be Published

Release Date

2018-05-02

Peptides

B3 domain-containing transcription repressor VAL2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B3 domain-containing transcription repressor VAL2