SMTL ID : 5z2c.4 (8 other biounits)

Crystal structure of ALPK-1 N-terminal domain in complex with ADP-heptose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x AYU: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4S,5S,6R)-6-[(1S)-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate(Non-covalent)

AYU.1: 18 residues within 4Å: Chain A: F.61, Q.67, Y.68, R.116, Y.119, Q.146, R.150, R.153, V.195, Q.198, Y.224, D.231, K.233, G.234, S.236, T.237, S.289, F.295 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:Q.67, A:R.153, A:R.153, A:Y.224, A:Y.224, A:D.231, A:K.233, A:K.233, A:S.236, A:S.236, A:T.237 Salt bridges: A:R.116, A:R.116, A:R.116, A:R.150, A:R.150, A:R.153, A:R.153, A:R.153, A:K.233, A:K.233, A:K.233 pi-Stacking: A:F.295, A:F.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, P. et al., Alpha-kinase 1 is a cytosolic innate immune receptor for bacterial ADP-heptose. Nature (2018)

Release Date

2018-08-22

Peptides

Alpha-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Alpha-protein kinase 1

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