SMTL ID : 5z2g.1 (2 other biounits)

Crystal Structure of L-amino acid oxidase from venom of Naja atra

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 3 residues within 4Å: Chain A: T.190, N.191, Y.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.191 NAG.2: 4 residues within 4Å: Chain A: E.354, H.359, N.376, N.378 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.351, A:H.359, A:N.378 NAG.3: 3 residues within 4Å: Chain A: K.164, R.181, N.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.164 NAG.5: 3 residues within 4Å: Chain B: T.190, N.191, Y.194 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.191

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 37 residues within 4Å: Chain A: V.58, G.59, A.60, G.61, M.62, A.63, L.81, E.82, A.83, G.88, G.89, R.90, V.91, G.106, P.107, M.108, R.109, L.110, A.278, R.279, V.280, C.310, S.311, T.312, A.315, A.341, Y.389, W.436, Y.441, S.445, I.446, G.472, E.473, G.480, W.481, I.482, T.485 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:A.341, A:I.446, A:I.446 Hydrogen bonds: A:A.60, A:A.63, A:A.83, A:R.90, A:M.108, A:R.109, A:R.109, A:R.279, A:V.280, A:V.280, A:E.473, A:E.473, A:E.473, A:I.482, A:T.485 Water bridges: A:M.62, A:V.91, A:T.312, A:T.312, A:W.481, A:D.483 Salt bridges: A:R.90, A:R.90 FAD.6: 38 residues within 4Å: Chain B: V.58, G.59, A.60, G.61, M.62, A.63, L.81, E.82, A.83, G.88, G.89, R.90, V.91, G.106, P.107, M.108, R.109, L.110, A.278, R.279, V.280, C.310, S.311, T.312, A.315, A.341, Y.389, W.436, Y.441, T.442, S.445, I.446, G.472, E.473, G.480, W.481, I.482, T.485 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:A.341, B:Y.389, B:I.446 Hydrogen bonds: B:A.60, B:M.62, B:A.63, B:A.83, B:S.84, B:R.90, B:V.91, B:M.108, B:R.109, B:R.109, B:V.280, B:V.280, B:E.473, B:E.473, B:I.482, B:T.485 Water bridges: B:S.84, B:R.90, B:R.90, B:R.279, B:T.312, B:D.483 Salt bridges: B:R.90, B:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, J.V. et al., Crystal Structure of L-amino acid oxidase from naja atra (Taiwan Cobra). To Be Published

Release Date

2018-06-20

Peptides

L-amino acid oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-amino acid oxidase

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