SMTL ID : 5z2m.1 (1 other biounit)

Structure of Orp1L/Rab7 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain B: T.22, T.40, D.63 Ligands: GTP.2 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.22, B:T.40, H2O.5

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 24 residues within 4Å: Chain B: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, F.33, S.34, N.35, Y.37, A.39, T.40, A.65, G.66, N.125, K.126, D.128, L.129, S.155, A.156, K.157 Ligands: MG.1 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:G.18, B:V.19, B:G.20, B:K.21, B:T.22, B:S.23, B:S.23, B:S.34, B:Y.37, B:T.40, B:T.64, B:G.66, B:N.125, B:K.126, B:K.126, B:S.155, B:A.156, B:K.157 Water bridges: B:T.22, B:L.67 Salt bridges: B:K.21, B:K.21, B:D.128 pi-Stacking: B:F.33, B:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, X. et al., A non-canonical GTPase interaction enables ORP1L-Rab7-RILP complex formation and late endosome positioning. J. Biol. Chem. (2018)

Release Date

2018-08-08

Peptides

Oxysterol-binding protein-related protein 1: A
Ras-related protein Rab-7a: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Oxysterol-binding protein-related protein 1

Ras-related protein Rab-7a

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