SMTL ID : 5z2x.1 (1 other biounit)

Structure of Alcohol dehydrogenase from Kluyveromyces polyspora(KpADH)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.7, S.9, G.10, Y.11, I.12, R.32, K.36, E.56, I.57, A.80, A.81, S.82, P.83, V.84, P.98, T.124, A.125, S.126, Y.164, K.168, P.195, S.196, F.197, V.198, N.213, T.215 Ligands: GOL.8 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:P.195, A:V.198 Hydrogen bonds: A:G.7, A:S.9, A:G.10, A:Y.11, A:I.12, A:R.32, A:R.32, A:E.56, A:I.57, A:A.80, A:S.82, A:K.168, A:V.198, A:T.215 Water bridges: A:G.7, A:S.9, A:S.9, A:S.9, A:N.213, A:N.213 Salt bridges: A:R.32, A:K.36 pi-Cation interactions: A:R.32

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: F.86, V.160, F.161, I.218 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: W.176 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: K.326, H.329 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.329 EDO.5: 5 residues within 4Å: Chain A: H.134, E.158, N.159, F.161, T.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.158, A:N.159 Water bridges: A:H.134 EDO.6: 1 residues within 4Å: Chain A: E.154 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: Q.238, G.268, A.269, L.299, T.304 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.238, A:A.269 Water bridges: A:T.304, A:T.304

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 7 residues within 4Å: Chain A: R.32, E.56, P.83, K.93, D.94, P.98 Ligands: NAP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.32, A:R.32, A:E.56, A:K.93, A:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J.Y. et al., Structural Insight into Enantioselective Inversion of an Alcohol Dehydrogenase Reveals a "Polar Gate" in Stereorecognition of Diaryl Ketones. J. Am. Chem. Soc. (2018)

Release Date

2019-01-02

Peptides

Alcohol dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alcohol dehydrogenase

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