SMTL ID : 5z35.1

Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus liberibacter asiaticus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Ligands: GOL.8 No protein-ligand interaction detected (PLIP) ACT.2: 2 residues within 4Å: Chain A: S.150, R.264 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.264, A:R.264 Salt bridges: A:R.264 ACT.3: 2 residues within 4Å: Chain A: R.211, N.237 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.211

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: V.28, T.29, T.30, E.33, K.50 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.28, A:T.30, A:E.33 Water bridges: A:T.30, A:K.50, A:K.50 Salt bridges: A:K.50 SO4.5: 4 residues within 4Å: Chain A: Y.245, S.250, K.251, G.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.245, A:K.251 Salt bridges: A:K.251 SO4.6: 2 residues within 4Å: Chain A: E.33, N.36 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.36, A:N.36 Water bridges: A:E.33, A:E.33

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: S.199, P.200, S.201, R.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.199, A:S.201, A:R.204, A:R.204 GOL.8: 1 residues within 4Å: Ligands: ACT.1 No protein-ligand interaction detected (PLIP) GOL.9: 3 residues within 4Å: Chain A: H.205, N.208, Q.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.208, A:Q.209 GOL.10: 3 residues within 4Å: Chain A: Q.19, N.20, K.23 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.19, A:N.20 Water bridges: A:D.16, A:N.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saini, G. et al., The analysis of subtle internal communications through mutation studies in periplasmic metal uptake protein CLas-ZnuA2. J. Struct. Biol. (2018)

Release Date

2018-10-03

Peptides

Periplasmic solute binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Periplasmic solute binding protein

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