SMTL ID : 5z3d.1

Glycosidase F290Y

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: A.61, Y.68, W.73, R.75, D.76, W.196, W.197, W.316, L.381, W.383 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.68, A:Y.68, A:R.75, A:R.75, A:D.76, A:D.76 GOL.2: 8 residues within 4Å: Chain A: R.242, V.245, S.246, V.250, L.255, L.277, V.278, V.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.246, A:L.277 Water bridges: A:S.246

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 5 residues within 4Å: Chain A: R.43, H.44, A.47, V.48, R.51 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.47 Hydrogen bonds: A:H.44 Water bridges: A:R.51, A:R.51 Salt bridges: A:R.43, A:H.44, A:H.44, A:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tagami, T. et al., Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J. (2022)

Release Date

2019-05-15

Peptides

Glycoside hydrolase 15-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase 15-related protein

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