SMTL ID : 5z3f.1

Glycosidase E335A in complex with glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 17 residues within 4Å: Chain A: A.61, A.62, Y.68, W.73, R.75, D.76, Q.149, W.196, W.197, E.198, R.304, F.310, W.316, W.374, L.381, W.383 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.68, A:R.75, A:R.75, A:D.76, A:W.196, A:R.304

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: Y.68, W.197, E.198, E.199, R.304, F.310, W.370 Ligands: BGC.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.199, A:E.199, A:R.304, A:R.304 Water bridges: A:D.308 GOL.3: 8 residues within 4Å: Chain A: R.242, V.245, S.246, V.250, L.255, L.277, V.278, V.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.242, A:S.246 Water bridges: A:R.242 GOL.4: 5 residues within 4Å: Chain A: R.106, R.107, G.138, N.139, D.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.106, A:R.106 Water bridges: A:D.140, A:D.140

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.5: 6 residues within 4Å: Chain A: R.43, H.44, A.47, V.48, R.51, D.350 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.47 Hydrogen bonds: A:H.44 Water bridges: A:H.44, A:H.44, A:A.47 Salt bridges: A:R.43, A:H.44, A:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tagami, T. et al., Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J. (2022)

Release Date

2019-05-15

Peptides

Glycoside hydrolase 15-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase 15-related protein

Related Entries With Identical Sequence