SMTL ID : 5z3j.1

Crystal Structure of Abrin A chain (Recombinant) in complex with Nicotinamide at 1.7 Angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 4 residues within 4Å: Chain A: S.109, Q.118, H.119, S.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.120 Water bridges: A:S.109

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 7 residues within 4Å: Chain A: Y.88, V.89, G.125, Y.127, I.173, E.178, R.181 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.127, A:I.173 Hydrogen bonds: A:V.89, A:V.89, A:R.181, A:R.181 pi-Stacking: A:Y.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bansia, H. et al., Structural basis for neutralization of cytotoxic abrin by monoclonal antibody D6F10. FEBS J. (2019)

Release Date

2019-01-02

Peptides

Abrin A-chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Abrin A-chain

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