SMTL ID : 5z4v.1

Crystal structure of the sheep signalling glycoprotein (SPS-40) complex with 2-methyl-2-4-pentanediol at 1.65A resolution reveals specific binding characteristics of SPS-40

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.39, I.40, S.41, W.48, R.84 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.48 Hydrogen bonds: A:N.39, A:R.84 Water bridges: A:S.41, A:S.41, A:N.42, A:N.42, A:R.84

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 8 residues within 4Å: Chain A: W.10, R.14, W.78, T.266, E.268, I.271, W.330, L.334 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.78, A:E.268, A:I.271 Hydrogen bonds: A:R.14 Water bridges: A:W.10, A:W.10, A:R.14, A:T.266 MPD.3: 3 residues within 4Å: Chain A: Y.185, D.186, W.330 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.186, A:W.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, P. et al., Crystal structure of the sheep signalling glycoprotein (SPS-40) complex with 2-methyl-2-4-pentanediol at 1.65A resolution reveals specific binding characteristics of SPS-40. To Be Published

Release Date

2018-02-14

Peptides

Chitinase-3-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase-3-like protein 1

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