SMTL ID : 5z5k.1

Structure of the DCC-Draxin complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: S.9, L.20, N.22 Ligands: NAG-NAG.2, NAG-NAG.2 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 9 residues within 4Å: Chain A: S.6, L.20, N.22, S.24, L.54, N.56, S.58 Ligands: NAG-NAG.1, NAG-NAG.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.20 NAG-NAG.3: 2 residues within 4Å: Chain A: N.261, T.263 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: V.273, T.275, N.280 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.273, A:T.275 Hydrogen bonds: A:N.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC. Neuron (2018)

Release Date

2018-06-20

Peptides

Netrin receptor DCC: A
Draxin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Netrin receptor DCC

Draxin