SMTL ID : 5z7b.1

Crystal structure of the VanR transcription factor in complex with vanillate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x VNL: 4-HYDROXY-3-METHOXYBENZOATE(Non-covalent)

VNL.1: 12 residues within 4Å: Chain A: S.34, V.35, M.139, L.143, H.148, T.150, L.151, R.154, K.170, Y.174 Chain B: A.108, Y.109 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.143, A:K.170 Hydrogen bonds: A:Y.174, B:Y.109 Salt bridges: A:R.154, A:K.170 VNL.2: 12 residues within 4Å: Chain A: A.108, Y.109 Chain B: S.34, V.35, M.139, L.143, H.148, T.150, L.151, R.154, K.170, Y.174 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.143, B:K.170 Salt bridges: B:R.154, B:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kwak, Y.M. et al., Crystal structure of the VanR transcription factor and the role of its unique alpha-helix in effector recognition. FEBS J. (2018)

Release Date

2018-08-29

Peptides

PadR family transcriptional regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PadR family transcriptional regulator