- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 1 x NDG- NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
NAG.2: 8 residues within 4Å:- Chain A: W.252, F.293, D.368, A.373
- Ligands: NDG-NAG-NAG-NAG-NAG.1, NDG-NAG-NAG-NAG-NAG.1, NAG.3, GOL.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.368, A:D.368, A:D.368, A:D.368
- Water bridges: A:R.423, A:R.423
NAG.3: 6 residues within 4Å:- Chain A: W.252
- Ligands: NDG-NAG-NAG-NAG-NAG.1, NDG-NAG-NAG-NAG-NAG.1, NDG-NAG-NAG-NAG-NAG.1, NAG.2, GOL.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:W.252
- Water bridges: A:W.252, A:W.252, A:W.252, A:R.423, A:R.423
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 12 residues within 4Å:- Chain A: D.368, F.369, Y.370, G.371, A.372, A.373, R.423
- Ligands: NDG-NAG-NAG-NAG-NAG.1, NDG-NAG-NAG-NAG-NAG.1, NAG.2, NAG.3, GOL.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.368, A:A.373
- Water bridges: A:R.423, A:R.423
GOL.5: 5 residues within 4Å:- Chain A: F.369, Y.370, G.371, D.374
- Ligands: GOL.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.371, A:D.374
GOL.6: 6 residues within 4Å:- Chain A: E.124, R.149, N.150, F.151, K.155, R.457
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.149, A:K.155
- Water bridges: A:E.124, A:N.150, A:K.155, A:R.457
GOL.7: 7 residues within 4Å:- Chain A: F.15, A.16, E.19, K.34, A.37, D.38
- Ligands: GOL.10
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.16, A:E.19, A:D.38, A:D.38
- Water bridges: A:E.19
GOL.8: 6 residues within 4Å:- Chain A: N.59, K.81, G.82, G.83, R.84, Y.85
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.59, A:K.81, A:K.81
- Water bridges: A:R.84
GOL.9: 3 residues within 4Å:- Chain A: I.8, W.10, T.103
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:I.8, A:T.103
- Water bridges: A:I.8, A:A.9, A:G.11
GOL.10: 6 residues within 4Å:- Chain A: E.19, V.20, Q.22, D.223, P.225
- Ligands: GOL.7
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.20, A:V.20, A:Q.22, A:D.223
GOL.11: 4 residues within 4Å:- Chain A: T.52, T.53, C.92, N.93
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.52, A:T.53, A:N.93
- Water bridges: A:K.55, A:K.55
GOL.12: 2 residues within 4Å:- Chain A: M.464, Y.470
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.470, A:D.494
GOL.13: 6 residues within 4Å:- Chain A: G.134, K.135, V.136, T.162, H.163, H.361
3 PLIP interactions:3 interactions with chain A- Water bridges: A:G.134, A:K.135, A:H.163
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, A. et al., Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nat Commun (2018)
- Release Date
- 2018-09-26
- Peptides
- Chitinase A: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 1 x NDG- NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, A. et al., Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nat Commun (2018)
- Release Date
- 2018-09-26
- Peptides
- Chitinase A: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A