SMTL ID : 5z9b.2 (1 other biounit)

Bacterial GyrB ATPase domain in complex with (3,4-dichlorophenyl)hydrazine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.6, K.7, P.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.7 PO4.2: 3 residues within 4Å: Chain A: H.50, R.154, K.194 6 PLIP interactions: 6 interactions with chain A Water bridges: A:A.51, A:A.51, A:R.154 Salt bridges: A:H.50, A:R.154, A:K.194

1 x HX3: (3,4-dichlorophenyl)hydrazine(Non-covalent)

HX3.3: 11 residues within 4Å: Chain A: N.32, A.33, E.36, V.57, D.59, I.64, I.80, M.81, V.106, T.151, V.153 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.32, A:E.36, A:I.64, A:T.151, A:V.153 Hydrogen bonds: A:D.59, A:T.151, A:V.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, X. et al., Identification of an auxiliary druggable pocket in the DNA gyrase ATPase domain using fragment probes. Medchemcomm (2018)

Release Date

2018-12-12

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

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