SMTL ID : 5z9p.2 (1 other biounit)

Bacterial GyrB ATPase domain in complex with a chemical fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x AX7: 1H-benzimidazol-2-amine(Non-covalent)

AX7.1: 5 residues within 4Å: Chain A: N.41, D.68, I.73, I.89, L.90 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.41, A:I.73, A:I.89, A:L.90 Hydrogen bonds: A:S.42, A:T.137 Water bridges: A:N.41, A:S.42, A:S.42, A:G.70 Salt bridges: A:D.68

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: N.41 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, X. et al., Identification of an auxiliary druggable pocket in the DNA gyrase ATPase domain using fragment probes. Medchemcomm (2018)

Release Date

2018-12-12

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

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