- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 4 x COA: COENZYME A(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain A: E.93, R.147, N.214
- Chain B: K.154
- Chain C: L.221
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.147, A:N.214, B:K.154
EDO.3: 3 residues within 4Å:- Chain A: R.21, D.23, K.24
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.21
EDO.4: 6 residues within 4Å:- Chain A: K.59, G.105, Y.106, E.126, A.127, Q.128
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.128
EDO.5: 6 residues within 4Å:- Chain A: T.74, A.76
- Chain D: I.204, S.237, T.238, E.239
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:E.239, A:T.74
- Water bridges: D:D.240, A:A.76
EDO.9: 6 residues within 4Å:- Chain B: K.59, G.105, Y.106, E.126, A.127, Q.128
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.128
EDO.12: 5 residues within 4Å:- Chain B: N.179, R.180
- Chain C: R.156, E.159, M.160
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Water bridges: C:Y.175
- Hydrogen bonds: B:N.179, B:R.180
EDO.15: 7 residues within 4Å:- Chain D: E.113, E.133, I.138, P.140, G.141, Y.142
- Chain F: W.232
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain D- Hydrogen bonds: F:W.232, D:E.113, D:G.141, D:Y.142
EDO.16: 5 residues within 4Å:- Chain D: N.13, L.14, E.196, A.199, K.200
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.13
- Water bridges: D:N.13
EDO.17: 5 residues within 4Å:- Chain D: R.156, E.159, M.160, Y.175
- Chain F: N.179
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:R.156, F:N.179
EDO.23: 6 residues within 4Å:- Chain E: N.179
- Chain F: R.156, E.159, M.160, I.167, Y.175
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.179
EDO.24: 5 residues within 4Å:- Chain F: K.9, W.16, T.18, T.55, E.188
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:K.9, F:T.18, F:T.18, F:E.188, F:R.192
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: K.9, E.11, W.16, T.18, T.55, E.188, R.192
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.9, A:K.9, A:E.11, A:T.18, A:R.192
GOL.7: 6 residues within 4Å:- Chain A: R.156, E.159, M.160, I.167, D.171, Y.175
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.171, A:Y.175
GOL.10: 7 residues within 4Å:- Chain A: N.179, R.180
- Chain B: R.156, E.159, M.160, I.167, Y.175
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.179, A:R.180
GOL.13: 6 residues within 4Å:- Chain A: K.154
- Chain C: E.93, R.147, R.150, N.214, L.217
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.214
- Water bridges: C:E.93, C:R.150
GOL.14: 6 residues within 4Å:- Chain C: F.236, S.237, T.238, E.239, K.241, K.242
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.241, C:K.241
GOL.18: 6 residues within 4Å:- Chain D: E.11, W.16, T.18, T.55, E.188, R.192
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.11, D:T.18, D:R.192
GOL.19: 6 residues within 4Å:- Chain D: E.93, R.147, R.150, L.217
- Chain E: K.154
- Chain F: L.221
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain D- Hydrogen bonds: E:K.154, D:E.93, D:R.147
- Water bridges: D:R.150
GOL.20: 1 residues within 4Å:- Chain D: K.9
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.9
GOL.22: 8 residues within 4Å:- Chain D: N.179, R.180
- Chain E: R.156, E.159, M.160, D.165, I.167, Y.175
6 PLIP interactions:2 interactions with chain D, 4 interactions with chain E- Hydrogen bonds: D:N.179, D:R.180, E:D.165, E:D.165, E:Y.175, E:Y.175
GOL.25: 6 residues within 4Å:- Chain D: L.221
- Chain E: E.93, R.147, R.150, N.214
- Chain F: K.154
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:K.154
- Water bridges: F:K.154, E:E.93
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, D. et al., Structural Insight into Substrate Specificity of 3-Hydroxypropionyl-Coenzyme A Dehydratase from Metallosphaera sedula. Sci Rep (2018)
- Release Date
- 2018-08-01
- Peptides
- 3-hydroxypropionyl-coenzyme A dehydratase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 4 x COA: COENZYME A(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, D. et al., Structural Insight into Substrate Specificity of 3-Hydroxypropionyl-Coenzyme A Dehydratase from Metallosphaera sedula. Sci Rep (2018)
- Release Date
- 2018-08-01
- Peptides
- 3-hydroxypropionyl-coenzyme A dehydratase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F