SMTL ID : 5zbn.3 (2 other biounits)

Structure of glycolate oxidase without FMN from Nicotiana benthamiana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: H.255, D.286, G.287, G.288, R.290, I.308, G.309, R.310, P.311 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.286, A:G.288, A:G.309, A:R.310 Water bridges: A:G.287, A:R.290 Salt bridges: A:H.255, A:R.290, A:R.310 PO4.2: 9 residues within 4Å: Chain B: H.255, D.286, G.287, G.288, R.290, I.308, G.309, R.310, P.311 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.286, B:G.288, B:G.309, B:R.310 Water bridges: B:G.287, B:R.290 Salt bridges: B:H.255, B:R.290, B:R.310 PO4.3: 9 residues within 4Å: Chain C: H.255, D.286, G.287, G.288, R.290, I.308, G.309, R.310, P.311 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.286, C:G.288, C:G.309, C:R.310 Water bridges: C:G.287, C:R.290 Salt bridges: C:H.255, C:R.290, C:R.310 PO4.4: 9 residues within 4Å: Chain D: H.255, D.286, G.287, G.288, R.290, I.308, G.309, R.310, P.311 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:D.286, D:G.288, D:G.309, D:R.310 Water bridges: D:G.287, D:R.290 Salt bridges: D:H.255, D:R.290, D:R.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Structures of glycolate oxidase from Nicotiana benthamiana reveal a conserved pH sensor affecting the binding of FMN. Biochem.Biophys.Res.Commun. (2018)

Release Date

2018-12-26

Peptides

Glycolate oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

D
C

Glycolate oxidase

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