SMTL ID : 5zbq.1

The Crystal Structure of human neuropeptide Y Y1 receptor with UR-MK299

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x 9AO: N~2~-(diphenylacetyl)-N-[(4-hydroxyphenyl)methyl]-N~5~-(N'-{[2-(propanoylamino)ethyl]carbamoyl}carbamimidoyl)-D-ornithinamide(Non-covalent)

9AO.1: 20 residues within 4Å: Chain A: L.25, P.116, Q.119, C.120, I.123, F.172, D.199, T.211, L.215, Q.218, L.278, T.279, F.281, N.282, T.283, F.285, D.286, H.289, H.297, F.301 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.25, A:Q.119, A:I.123, A:L.278, A:N.282, A:F.285, A:F.285, A:F.285, A:F.301, A:F.301 Hydrogen bonds: A:Q.218, A:N.282, A:N.282, A:D.286 Salt bridges: A:D.286 pi-Stacking: A:F.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z. et al., Structural basis of ligand binding modes at the neuropeptide Y Y1receptor. Nature (2018)

Release Date

2018-04-25

Peptides

Neuropeptide Y receptor type 1,T4 Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Neuropeptide Y receptor type 1,T4 Lysozyme