SMTL ID : 5zbr.1 (2 other biounits)

Crystal Structure of Kinesin-3 KIF13B motor domain in AMPPNP form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 14 residues within 4Å: Chain A: R.9, R.11, P.12, Q.102, T.103, G.104, S.105, G.106, K.107, S.108, Y.109, S.218, G.254 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.9, A:G.104, A:S.105, A:G.106, A:K.107, A:K.107, A:K.107, A:S.108, A:S.108, A:Y.109, A:G.254 Water bridges: A:R.9, A:N.14, A:S.62, A:S.62, A:S.108 pi-Stacking: A:Y.109, A:Y.109

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.108, D.251 Ligands: ANP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.108, H2O.2, H2O.3, H2O.3 MG.3: 5 residues within 4Å: Chain A: Y.93, N.94, N.319, V.356, N.358 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.356

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: S.340, R.343 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.340 Water bridges: A:S.340, A:S.340 Salt bridges: A:R.343 PO4.5: 4 residues within 4Å: Chain A: K.52, F.54, L.339, R.343 3 PLIP interactions: 3 interactions with chain A Water bridges: A:I.53 Salt bridges: A:K.52, A:R.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Structural Delineation of the Neck Linker of Kinesin-3 for Processive Movement. J. Mol. Biol. (2018)

Release Date

2018-05-30

Peptides

Kinesin family member 13B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Kinesin family member 13B

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