SMTL ID : 5zfi.1

Mouse kallikrein 7 in complex with 6-benzyl-1,4-diazepan-7-one derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 9C9: 2-[(3Z,6R)-6-[(2,6-dichlorophenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxo-1,4-diazepan-1-yl]-N-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]acetamide(Non-covalent)

9C9.1: 18 residues within 4Å: Chain A: L.24, H.25, H.41, H.80, V.128, F.130, T.171, C.172, N.173, G.174, S.176, V.190, S.191, W.192, G.193, T.194, Y.195, C.197 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.130 Hydrogen bonds: A:N.173, A:G.174, A:S.191 pi-Stacking: A:F.130

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 8 residues within 4Å: Chain A: K.6, C.7, K.8, E.9, D.54, K.55, D.133, L.134 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.6, A:E.9, A:E.9, A:E.9, A:K.55, A:K.55, A:L.134, A:L.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murafuji, H. et al., Structure-based drug design to overcome species differences in kallikrein 7 inhibition of 1,3,6-trisubstituted 1,4-diazepan-7-ones. Bioorg. Med. Chem. (2018)

Release Date

2018-06-27

Peptides

Kallikrein-7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kallikrein-7

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