SMTL ID : 5zhz.1

Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.71, I.72, R.75, K.115, R.119 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.119 Salt bridges: A:R.71, A:R.75, A:K.115 SO4.2: 6 residues within 4Å: Chain A: G.133, G.134, D.135, H.136, A.137, R.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.135, A:H.136, A:A.137 Water bridges: A:A.137, A:R.141 Salt bridges: A:R.140 SO4.3: 12 residues within 4Å: Chain A: H.56, Y.59, H.96, E.129, D.162, H.165, D.204, H.206, E.233 Ligands: ZN.4, ZN.5, ZN.6 5 PLIP interactions: 5 interactions with chain A Water bridges: A:Y.59 Salt bridges: A:H.56, A:H.96, A:H.165, A:H.206

3 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.56, H.96, E.129 Ligands: SO4.3, ZN.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.56, A:H.96, A:E.129, H2O.1 ZN.5: 7 residues within 4Å: Chain A: E.129, D.162, H.165, H.191, E.233 Ligands: SO4.3, ZN.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.129, A:D.162, A:H.191, A:E.233, H2O.1 ZN.6: 4 residues within 4Å: Chain A: H.165, D.204, H.206 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.165, A:D.204, A:D.204, A:H.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-04-04

Peptides

Probable endonuclease 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable endonuclease 4