SMTL ID : 5zic.2 (1 other biounit)

Crystal structure of human GnT-V luminal domain in complex with acceptor sugar

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x BMA- Z4Y- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-6-thio-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose

BMA-Z4Y-NAG.1: 10 residues within 4Å: Chain A: L.69, E.90, I.135, L.159, D.160, S.161, F.162, W.183, F.332, K.336 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.69, A:E.90 Hydrogen bonds: A:S.161, A:S.161, A:K.336 Water bridges: A:L.159, A:L.159, A:F.162, A:F.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V. Nat Commun (2018)

Release Date

2018-08-01

Peptides

Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

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