SMTL ID : 5zit.1

Crystal structure of human Enterovirus D68 RdRp in complex with NADPH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 14 residues within 4Å: Chain A: E.104, L.106, D.107, H.195, V.206, G.207, S.284, G.285, S.286, S.287, G.288, T.289, S.290, Y.322 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.107, A:D.107, A:G.207, A:G.288, A:T.289, A:S.290, A:S.290

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: E.365, Y.373, F.374, R.375 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Structure of the enterovirus D68 RNA-dependent RNA polymerase in complex with NADPH implicates an inhibitor binding site in the RNA template tunnel. J.Struct.Biol. (2020)

Release Date

2019-04-17

Peptides

RdRp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RdRp

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