SMTL ID : 5ziu.1

Crystal structure of human Entervirus D68 RdRp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.371, M.388, E.392, I.393, S.396, L.413, L.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.392 GOL.2: 6 residues within 4Å: Chain A: I.3, N.6, E.51, F.55, R.274, Y.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.6, A:R.274 GOL.3: 7 residues within 4Å: Chain A: A.205, G.207, C.208, P.210, Y.322, L.370, R.372 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.208, A:R.372 Water bridges: A:G.207, A:Y.322

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 11 residues within 4Å: Chain A: E.224, I.225, F.226, Y.330, H.332, K.333, I.334, P.336, D.354, D.361, T.362 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.332, A:I.334, A:D.354, A:D.354, A:T.362 PEG.5: 9 residues within 4Å: Chain A: L.103, R.184, Y.191, H.195, V.206, S.287, S.290, I.291, Y.322 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.184, A:S.290, A:S.290, A:Y.322 PEG.6: 5 residues within 4Å: Chain A: M.66, D.67, E.68, E.71, E.72 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, M.L. et al., Crystal structure of human Entervirus D68 RdRp in complex with NADPH. To Be Published

Release Date

2019-04-17

Peptides

RdRp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RdRp

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