SMTL ID : 5zjb.1

Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 8 residues within 4Å: Chain A: E.203, G.204, R.205, T.224, V.225, G.226, S.227, R.231 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.205, A:G.226, A:S.227, A:S.227 Water bridges: A:S.39, A:G.204, A:Y.206, A:R.231, A:R.231, A:R.231 Salt bridges: A:R.231 MLI.5: 10 residues within 4Å: Chain B: S.39, E.203, G.204, R.205, T.224, V.225, G.226, S.227, R.231 Ligands: MLI.6 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:R.205, B:G.226, B:S.227 Water bridges: B:Y.206, B:Y.206, B:S.227, B:S.227, B:R.231, B:R.231, B:R.231, B:R.231, B:R.231 Salt bridges: B:R.231 MLI.6: 7 residues within 4Å: Chain B: K.93, R.102, I.103, T.172, L.173, Y.176 Ligands: MLI.5 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.173, B:Y.176 Water bridges: B:K.93, B:K.93, B:K.93, B:R.102, B:R.102 Salt bridges: B:K.93, B:K.93, B:R.102

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: Q.63 Chain B: V.43, T.44, G.45, S.46, P.47, E.233 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.45, B:E.233, B:E.233 PEG.3: 2 residues within 4Å: Chain A: N.207, W.238 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.210 PEG.4: 4 residues within 4Å: Chain A: S.81, G.117, A.118, T.119 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.20, A:I.88 PEG.7: 3 residues within 4Å: Chain B: T.208, E.210, L.211 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.208, B:E.210 Water bridges: B:E.210, B:E.210 PEG.8: 5 residues within 4Å: Chain A: P.209, E.210 Chain B: N.207, T.208, W.238 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manjunath, L. et al., Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-09-19

Peptides

Putative N-acetylmannosamine-6-phosphate 2-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative N-acetylmannosamine-6-phosphate 2-epimerase

Related Entries With Identical Sequence