SMTL ID : 5zjp.1

Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae with N-acetylglucosamine-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-dimer

Ligands

2 x RFW: N-acetyl-D-glucosamine-6-phosphate(Non-covalent)

RFW.1: 14 residues within 4Å: Chain A: S.20, Q.22, R.51, I.72, K.74, R.83, I.84, Y.157, E.184, R.186, V.206, G.207, S.208, R.212 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.157 Hydrogen bonds: A:S.20, A:Q.22, A:R.51, A:K.74, A:R.83, A:R.186, A:G.207, A:S.208, A:R.212, A:R.212 RFW.3: 13 residues within 4Å: Chain B: Q.22, R.51, I.72, K.74, I.84, Y.157, E.184, G.185, R.186, V.206, G.207, S.208, R.212 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:Y.157 Hydrogen bonds: B:Q.22, B:R.51, B:K.74, B:K.74, B:G.185, B:R.186, B:G.207, B:S.208, B:R.212, B:R.212

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 8 residues within 4Å: Chain A: N.188, T.189, V.216, W.219 Chain B: P.190, E.191, A.209, V.216 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.191

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 1 residues within 4Å: Chain B: L.140 No protein-ligand interaction detected (PLIP) PEG.5: 5 residues within 4Å: Chain B: I.6, K.10, G.178, F.179, F.180 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.10

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain B: F.3, T.66 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manjunath, L. et al., Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-12-05

Peptides

Putative N-acetylmannosamine-6-phosphate 2-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative N-acetylmannosamine-6-phosphate 2-epimerase