SMTL ID : 5zka.1

Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum complexed with Pyruvate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: A.15, G.16, D.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.15, A:G.16, A:D.196 EDO.2: 1 residues within 4Å: Chain A: K.306 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.306 EDO.3: 5 residues within 4Å: Chain A: D.204, E.205, T.222, L.260, L.264 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.204, A:D.204 Water bridges: A:S.221, A:S.221 EDO.4: 2 residues within 4Å: Chain B: Q.281, I.284 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.281 Water bridges: B:K.288 EDO.5: 3 residues within 4Å: Chain B: D.194, E.195, L.250 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.194, B:D.194

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 5 residues within 4Å: Chain B: F.159, A.183, F.184, P.185, D.186 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, J.P. et al., Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-12-05

Peptides

N-acetylneuraminate lyase: A
N-acetylneuraminate lyase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-acetylneuraminate lyase

N-acetylneuraminate lyase