SMTL ID : 5zkp.1

Crystal structure of the human platelet-activating factor receptor in complex with SR 27417

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x 9ER: N1,N1-dimethyl-N2-[(pyridin-3-yl)methyl]-N2-{4-[2,4,6-tri(propan-2-yl)phenyl]-1,3-thiazol-2-yl}ethane-1,2-diamine(Non-covalent)

9ER.1: 17 residues within 4Å: Chain A: Y.24, W.75, Y.79, G.96, F.99, F.100, T.103, Y.104, F.154, F.176, Y.179, I.193, Q.394, W.397, H.417, L.421, L.424 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.24, A:F.99, A:F.99, A:F.100, A:F.100, A:T.103, A:Y.104, A:F.154, A:F.176, A:I.193, A:I.193, A:Q.394, A:L.424 Hydrogen bonds: A:Y.79 pi-Stacking: A:W.75, A:W.75, A:F.99, A:F.100

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 19 residues within 4Å: Chain A: S.227, T.228, T.229, G.230, N.231, T.232, S.275, T.276, W.277, G.278, D.279, C.310, G.311, D.312, W.315, Y.317, F.318, C.319, G.345 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.277, A:W.277 Hydrogen bonds: A:T.228, A:T.229, A:T.229, A:G.230, A:N.231, A:N.231, A:T.232, A:T.232, A:T.232, A:S.275, A:T.276, A:T.276, A:G.311, A:D.312, A:Y.317, A:C.319 pi-Stacking: A:W.315, A:W.315, A:W.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, C. et al., Structural basis for signal recognition and transduction by platelet-activating-factor receptor. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-06-20

Peptides

Platelet-activating factor receptor,Flavodoxin,Platelet-activating factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Platelet-activating factor receptor,Flavodoxin,Platelet-activating factor receptor