- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 9EU: 4-ethynyl-3-{3-fluoro-4-[(2-methyl-1H-imidazo[4,5-c]pyridin-1-yl)methyl]benzene-1-carbonyl}-N,N-dimethyl-1H-indole-1-carboxamide(Non-covalent)
- 7 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.2: 13 residues within 4Å:- Chain A: A.150, Y.153, F.154, L.157, E.180, P.185, V.186, I.189, F.192, I.193
- Ligands: 9EU.1, OLC.3, OLC.4
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:A.150, A:Y.153, A:F.154, A:L.157, A:L.157, A:V.186, A:I.189, A:F.192, A:I.193
OLC.3: 5 residues within 4Å:- Chain A: Y.153, I.156, L.157, D.158
- Ligands: OLC.2
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.153, A:Y.153, A:L.157
- Hydrogen bonds: A:D.158, A:D.158
OLC.4: 12 residues within 4Å:- Chain A: Y.104, A.108, V.142, I.143, V.145, A.146, I.147, G.149, A.150, S.196, V.200
- Ligands: OLC.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.108, A:V.142, A:I.143, A:A.146, A:I.147, A:V.200
OLC.5: 3 residues within 4Å:- Chain A: L.155, I.156, L.157
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.155, A:I.156
OLC.8: 11 residues within 4Å:- Chain B: F.100, A.150, Y.153, F.154, L.157, S.183, P.185, V.186, F.192
- Ligands: 9EU.7, OLC.9
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.100, B:Y.153, B:L.157, B:V.186, B:F.192
OLC.9: 4 residues within 4Å:- Chain B: Y.153, L.157, I.189
- Ligands: OLC.8
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.153, B:L.157, B:I.189
OLC.10: 10 residues within 4Å:- Chain B: N.60, M.63, L.67, V.94, L.98, I.101, R.133, I.137, L.141, W.144
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:M.63, B:L.67, B:V.94, B:L.98, B:I.101, B:L.141, B:W.144, B:W.144
- Hydrogen bonds: B:N.60, B:R.133
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.12: 2 residues within 4Å:- Chain B: M.282
- Ligands: SO4.17
No protein-ligand interaction detected (PLIP)SO4.13: 3 residues within 4Å:- Chain B: A.249, R.252, R.256
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.249
- Salt bridges: B:R.252, B:R.256
SO4.14: 2 residues within 4Å:- Chain B: R.295, R.301
3 PLIP interactions:3 interactions with chain B- Water bridges: B:Q.299
- Salt bridges: B:R.295, B:R.301
SO4.15: 3 residues within 4Å:- Chain B: G.286, G.289
- Ligands: SO4.17
No protein-ligand interaction detected (PLIP)SO4.16: 4 residues within 4Å:- Chain B: T.318, P.319, N.320, R.321
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.318, B:N.320, B:N.320, B:R.321
SO4.17: 4 residues within 4Å:- Chain B: T.285, G.286
- Ligands: SO4.12, SO4.15
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.285
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cao, C. et al., Structural basis for signal recognition and transduction by platelet-activating-factor receptor. Nat. Struct. Mol. Biol. (2018)
- Release Date
- 2018-06-20
- Peptides
- Platelet-activating factor receptor,Endolysin,Endolysin,Platelet-activating factor receptor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 9EU: 4-ethynyl-3-{3-fluoro-4-[(2-methyl-1H-imidazo[4,5-c]pyridin-1-yl)methyl]benzene-1-carbonyl}-N,N-dimethyl-1H-indole-1-carboxamide(Non-covalent)
- 7 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cao, C. et al., Structural basis for signal recognition and transduction by platelet-activating-factor receptor. Nat. Struct. Mol. Biol. (2018)
- Release Date
- 2018-06-20
- Peptides
- Platelet-activating factor receptor,Endolysin,Endolysin,Platelet-activating factor receptor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.