SMTL ID : 5zlj.1

Crystal structure of CotA native enzyme, PH8.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.419, C.492, I.494, H.497, M.502 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.419, A:C.492, A:H.497 CU.2: 5 residues within 4Å: Chain A: H.105, H.107, H.422, H.424 Ligands: CU.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.105, A:H.422, H2O.9 CU.3: 6 residues within 4Å: Chain A: H.105, H.155, H.422, H.424, H.491 Ligands: CU.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.155, A:H.424, A:H.491, H2O.15 CU.4: 5 residues within 4Å: Chain A: H.105, H.107, W.151, H.153, H.493 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.107, A:H.153, A:H.493, H2O.15

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: D.113, D.114, Y.118, A.121, Y.133, K.135, R.487 Ligands: EDO.11 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.133, A:R.487, A:R.487 Water bridges: A:D.113, A:D.114, A:K.135, A:K.135

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: I.12, E.188, E.244, Y.250, K.341 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.250 EDO.7: 6 residues within 4Å: Chain A: F.292, S.293, Y.300, P.457, S.459 Ligands: EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.293 Water bridges: A:Y.300, A:Y.300, A:Y.300 EDO.8: 6 residues within 4Å: Chain A: D.268, I.315, A.317, P.328, A.332, N.333 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.328 Water bridges: A:N.333 EDO.9: 4 residues within 4Å: Chain A: R.433, Q.468, H.470 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.293, A:E.460, A:Q.468 EDO.10: 5 residues within 4Å: Chain A: E.188, Y.189, E.246, K.341 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.341 EDO.11: 4 residues within 4Å: Chain A: D.113, D.114, K.135 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.114, A:D.114, A:K.135 EDO.12: 4 residues within 4Å: Chain A: R.136, E.137, V.138 Ligands: EDO.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.137, A:V.138 EDO.13: 3 residues within 4Å: Chain A: Y.69, V.138 Ligands: EDO.12 No protein-ligand interaction detected (PLIP) EDO.14: 9 residues within 4Å: Chain A: G.108, Q.145, A.148, L.150, D.279, G.280, R.299, S.427, D.465 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, T. et al., Structural Insight into the Allosteric Coupling of Cu1 Site and Trinuclear Cu Cluster in CotA Laccase. Chembiochem (2018)

Release Date

2018-05-16

Peptides

Spore coat protein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spore coat protein A

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