SMTL ID : 5zm8.1 (1 other biounit)

Crystal structure of ORP2-ORD in complex with PI(4,5)P2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x IEP: [(2~{S})-1-octadecanoyloxy-3-[oxidanyl-[(1~{R},2~{R},3~{S},4~{S},5~{S},6~{S})-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] icosa-5,8,11,14-tetraenoate(Non-covalent)

IEP.1: 22 residues within 4Å: Chain A: K.65, I.66, T.67, M.68, F.72, K.125, H.153, H.154, F.181, V.214, V.217, E.402, R.406, R.409 Chain C: V.51, F.181, W.182, G.183, K.184, I.218 Chain D: V.59 Ligands: IEP.3 22 PLIP interactions: 15 interactions with chain A, 6 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: A:I.66, A:F.72, A:F.72, A:K.125, A:F.181, A:F.181, A:V.214, A:V.217, C:F.181, C:W.182, C:K.184, C:I.218, C:I.218, D:V.59 Hydrogen bonds: A:E.402, C:G.183 Salt bridges: A:K.65, A:K.65, A:H.153, A:H.154, A:R.406, A:R.409 IEP.2: 22 residues within 4Å: Chain B: K.65, I.66, T.67, M.68, F.72, K.125, H.153, H.154, F.181, V.214, V.217, E.402, R.406, R.409 Chain C: V.59 Chain D: V.51, F.181, W.182, G.183, K.184, I.218 Ligands: IEP.4 22 PLIP interactions: 15 interactions with chain B, 6 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: B:I.66, B:F.72, B:F.72, B:K.125, B:F.181, B:F.181, B:V.214, B:V.217, D:F.181, D:W.182, D:K.184, D:I.218, D:I.218, C:V.59 Hydrogen bonds: B:E.402, D:G.183 Salt bridges: B:K.65, B:K.65, B:H.153, B:H.154, B:R.406, B:R.409 IEP.3: 22 residues within 4Å: Chain A: V.51, F.181, W.182, G.183, K.184, I.218 Chain B: V.59 Chain C: K.65, I.66, T.67, M.68, F.72, K.125, H.153, H.154, F.181, V.214, V.217, E.402, R.406, R.409 Ligands: IEP.1 21 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: C:I.66, C:F.72, C:F.72, C:K.125, C:F.181, C:F.181, C:V.214, C:V.217, B:V.59, A:F.181, A:W.182, A:K.184, A:I.218, A:I.218 Salt bridges: C:K.65, C:K.65, C:H.153, C:H.154, C:R.406, C:R.409 Hydrogen bonds: A:G.183 IEP.4: 22 residues within 4Å: Chain A: V.59 Chain B: V.51, F.181, W.182, G.183, K.184, I.218 Chain D: K.65, I.66, T.67, M.68, F.72, K.125, H.153, H.154, F.181, V.214, V.217, E.402, R.406, R.409 Ligands: IEP.2 21 PLIP interactions: 14 interactions with chain D, 1 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: D:I.66, D:F.72, D:F.72, D:K.125, D:F.181, D:F.181, D:V.214, D:V.217, A:V.59, B:F.181, B:W.182, B:K.184, B:I.218, B:I.218 Salt bridges: D:K.65, D:K.65, D:H.153, D:H.154, D:R.406, D:R.409 Hydrogen bonds: B:G.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., ORP2 Delivers Cholesterol to the Plasma Membrane in Exchange for Phosphatidylinositol 4, 5-Bisphosphate (PI(4,5)P2). Mol. Cell (2019)

Release Date

2019-01-02

Peptides

Oxysterol-binding protein-related protein 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Oxysterol-binding protein-related protein 2

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