SMTL ID : 5zml.1

Stapled-peptides tailored against initiation of translation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 8 residues within 4Å: Chain A: K.69, I.72, K.80, D.121, D.122, V.123, C.124, T.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.69, A:T.142 Water bridges: A:K.69

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: F.22, L.34, D.64, S.66, P.74, V.127, W.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.66 Water bridges: A:N.129 EDO.3: 4 residues within 4Å: Chain A: I.89, T.90, Q.95, I.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.90, A:Q.95 Water bridges: A:N.92 EDO.4: 8 residues within 4Å: Chain A: S.57, R.96, R.97, S.98, D.99, L.100, D.101, R.102 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.98, A:L.100, A:D.101, A:D.101, A:R.102, A:R.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lama, D. et al., Structural insights reveal a recognition feature for tailoring hydrocarbon stapled-peptides against the eukaryotic translation initiation factor 4E protein. Chem Sci (2019)

Release Date

2019-02-20

Peptides

Eukaryotic translation initiation factor 4E: A
ACE-LYS-LYS-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-PHE-ARG-ARG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Eukaryotic translation initiation factor 4E

ACE-LYS-LYS-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-PHE-ARG-ARG

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