SMTL ID : 5znl.2 (1 other biounit)

Crystal structure of PDE10A catalytic domain complexed with LHB-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.82, H.116, D.117, D.227 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.82, A:H.116, A:D.117, A:D.227, H2O.1, H2O.1

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.117, E.145 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.117, H2O.1, H2O.1, H2O.1, H2O.1, H2O.1

1 x 9G6: N-[2-(7-methoxy-4-morpholin-4-yl-quinazolin-6-yl)oxyethyl]-1,3-benzothiazol-2-amine(Non-covalent)

9G6.3: 12 residues within 4Å: Chain A: L.188, L.228, Y.246, F.249, P.265, M.266, K.271, E.274, V.275, G.278, Q.279, F.282 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.249, A:P.265, A:E.274 Hydrogen bonds: A:Y.246, A:Q.279 pi-Stacking: A:F.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Absolute Binding Free Energy Calculation and Design of a Subnanomolar Inhibitor of Phosphodiesterase-10. J. Med. Chem. (2019)

Release Date

2019-02-20

Peptides

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

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