SMTL ID : 5znz.1

Structure of mDR3 DD with MBP tag mutant-I387V

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-tetramer

Ligands

26 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.411, F.412, R.413 Chain B: R.411, F.412 Ligand excluded by PLIP SO4.2: 8 residues within 4Å: Chain A: W.423, R.424, A.429, G.430, L.431, G.432, A.433, V.434 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: R.371, A.372, A.373 Chain D: K.421 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: A.78, E.79, K.274 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: N.151, Q.153, D.210, Y.211 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: N.186, A.187 Ligand excluded by PLIP SO4.7: 9 residues within 4Å: Chain B: W.423, R.424, Q.427, A.429, G.430, L.431, G.432, A.433, V.434 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: K.421 Chain C: R.371, A.372, A.373 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain B: N.186, A.187 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain B: K.389, R.393 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain B: A.370, R.371, A.372, A.373 Chain C: K.421 Ligand excluded by PLIP SO4.12: 1 residues within 4Å: Chain B: K.190 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: A.78, E.79, K.274 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: N.151, Q.153, D.210, Y.211 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain C: R.411, F.412 Chain D: R.411, F.412, R.413 Ligand excluded by PLIP SO4.16: 8 residues within 4Å: Chain A: R.411 Chain B: D.381, R.413 Chain C: R.411 Chain D: D.381, A.385, W.388, R.413 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: N.151, E.154, D.210, Y.211 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain C: W.423, R.424, A.429, G.430, L.431, G.432, A.433, V.434 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain C: N.186, A.187 Ligand excluded by PLIP SO4.20: 8 residues within 4Å: Chain A: D.381, A.385, W.388, R.413 Chain B: R.411 Chain C: D.381, R.413 Chain D: R.411 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain D: W.423, R.424, G.430, L.431, G.432, A.433, V.434, Y.435 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain A: K.421 Chain D: R.371, A.372, A.373 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: P.41, D.42, K.47 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain D: N.151, Q.153, D.210, Y.211 Ligand excluded by PLIP SO4.25: 1 residues within 4Å: Chain D: K.171 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain D: N.186, A.187 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, X. et al., Crystal structure and activation mechanism of DR3 death domain. Febs J. (2019)

Release Date

2019-04-17

Peptides

Maltose-binding periplasmic protein,Tumor necrosis factor receptor superfamily, member 25: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Maltose-binding periplasmic protein,Tumor necrosis factor receptor superfamily, member 25