SMTL ID : 5zo1.1

Crystal structure of mouse nectin-like molecule 4 (mNecl-4) full ectodomain (Ig1-Ig3), 2.2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 10 residues within 4Å: Chain A: Y.25, G.27, S.28, I.29, N.43, G.44, L.55, F.58, S.59, P.60 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: N.235, R.236, G.237, Q.238, T.266, R.277 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.237, A:Q.238, A:R.277 GOL.3: 4 residues within 4Å: Chain A: Q.262, G.263, L.282, V.283 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2019-01-30

Peptides

Cell adhesion molecule 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell adhesion molecule 4

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