SMTL ID : 5zoo.1

Crystal structure of histone deacetylase 4 (HDAC4) in complex with a SMRT corepressor SP1 fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: D.188, D.190, H.192, S.211, L.212, H.213 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.188, A:D.188, A:D.190, A:H.192, A:S.211 K.2: 4 residues within 4Å: Chain A: F.201, D.204, V.207, F.238 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:F.201, A:D.204, A:V.207, H2O.2

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: D.190, H.192, D.284 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.190, A:H.192, A:D.284, H2O.1, H2O.1 ZN.4: 4 residues within 4Å: Chain A: C.17, C.19, H.25, C.101 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.17, A:C.19, A:H.25, A:C.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.Y. et al., Structural basis of the specific interaction of SMRT corepressor with histone deacetylase 4. Nucleic Acids Res. (2018)

Release Date

2018-11-14

Peptides

Histone deacetylase 4: A
SMRT corepressor SP1 fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
A

Histone deacetylase 4

SMRT corepressor SP1 fragment