SMTL ID : 5zop.1

Crystal structure of histone deacetylase 4 (HDAC4) in complex with a SMRT corepressor SP2 fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 7 residues within 4Å: Chain A: D.187, D.189, H.191, H.192, S.210, L.211, H.212 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.187, A:D.187, A:H.191, A:S.210, A:L.211 K.2: 4 residues within 4Å: Chain A: F.200, D.203, V.206, F.237 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:F.200, A:V.206, A:F.237, H2O.1

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: D.189, H.191, D.283, G.323, Y.325 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.189, A:D.189, A:H.191, A:D.283, H2O.3 ZN.4: 4 residues within 4Å: Chain A: C.16, C.18, H.24, C.100 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.18, A:H.24, A:C.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.Y. et al., Structural basis of the specific interaction of SMRT corepressor with histone deacetylase 4. Nucleic Acids Res. (2018)

Release Date

2018-10-10

Peptides

Histone deacetylase 4: A
SMRT corepressor SP2 fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
A

Histone deacetylase 4

SMRT corepressor SP2 fragment