SMTL ID : 5zq6.1

SidE-Ubi-ADPr

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: H.54, R.114, Y.123, D.165, W.170, N.180, H.183, M.184, L.187, K.191, Y.200, Q.204 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.123, A:H.127, A:D.165, A:W.170, A:H.183, A:Y.200, A:Q.204 Salt bridges: A:R.114, A:H.183, A:K.191 pi-Stacking: A:W.170, A:W.170 ADP.2: 11 residues within 4Å: Chain D: H.54, R.114, Y.123, W.170, N.180, Q.181, H.183, M.184, L.187, Y.200, Q.204 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:W.170, D:N.180, D:Q.181, D:Y.200 Salt bridges: D:H.54, D:R.114, D:H.183 pi-Stacking: D:W.170, D:W.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Structural Insights into Non-canonical Ubiquitination Catalyzed by SidE. Cell (2018)

Release Date

2018-05-23

Peptides

SidE: AD
Ubiquitin: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

B
B

C
D

SidE

Ubiquitin

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