SMTL ID : 5zqk.1 (1 other biounit)

Dengue Virus Non Structural Protein 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: S.79, G.81, G.104, C.105, G.106, R.107, G.108, G.109, W.110, T.127, K.128, H.133, E.134, V.153, D.154, V.155, F.156, D.169, I.170 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.79, A:G.81, A:C.105, A:R.107, A:G.108, A:G.109, A:W.110, A:K.128, A:E.134, A:D.154, A:V.155, A:D.169 Water bridges: A:S.111 Salt bridges: A:D.169

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: A.496, W.498, D.562, R.622, G.623, S.624, T.629 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.498, A:W.498, A:D.562, A:S.624, A:S.624

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.735, H.737, C.751, C.870 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.735, A:H.737, A:C.751, A:C.870 ZN.4: 4 residues within 4Å: Chain A: E.461, H.465, C.470, C.473 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.461, A:H.465, A:C.470, A:C.473

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: G.226, A.247, S.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Sahili, A. et al., NS5 from Dengue Virus Serotype 2 Can Adopt a Conformation Analogous to That of Its Zika Virus and Japanese Encephalitis Virus Homologues. J.Virol. (2019)

Release Date

2019-06-12

Peptides

Non Structural Protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non Structural Protein 5

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