- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.81 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x GLY- ARG- LEU- LEU: GLY-ARG-LEU-LEU(Non-covalent)
- 36 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 8 residues within 4Å:- Chain A: P.73, R.75, E.76, M.77
- Chain I: T.21, S.22, A.23
- Ligands: NA.8
Ligand excluded by PLIPPEG.3: 6 residues within 4Å:- Chain A: G.47, R.68, P.69, R.82, R.84
- Chain D: E.42
Ligand excluded by PLIPPEG.4: 9 residues within 4Å:- Chain A: P.29, D.44, P.46, P.83
- Chain D: P.29, D.44, P.46, P.83
- Ligands: PEG.28
Ligand excluded by PLIPPEG.10: 8 residues within 4Å:- Chain B: P.73, R.75, E.76, M.77
- Chain L: T.21, S.22, A.23
- Ligands: NA.16
Ligand excluded by PLIPPEG.11: 6 residues within 4Å:- Chain B: G.47, R.68, P.69, R.82, R.84
- Chain C: E.42
Ligand excluded by PLIPPEG.12: 9 residues within 4Å:- Chain B: P.29, D.44, P.46, P.83
- Chain C: P.29, D.44, P.46, P.83
- Ligands: PEG.20
Ligand excluded by PLIPPEG.18: 8 residues within 4Å:- Chain C: P.73, R.75, E.76, M.77
- Chain J: T.21, S.22, A.23
- Ligands: NA.24
Ligand excluded by PLIPPEG.19: 6 residues within 4Å:- Chain B: E.42
- Chain C: G.47, R.68, P.69, R.82, R.84
Ligand excluded by PLIPPEG.20: 9 residues within 4Å:- Chain B: P.29, D.44, P.46, P.83
- Chain C: P.29, D.44, P.46, P.83
- Ligands: PEG.12
Ligand excluded by PLIPPEG.26: 8 residues within 4Å:- Chain D: P.73, R.75, E.76, M.77
- Chain K: T.21, S.22, A.23
- Ligands: NA.32
Ligand excluded by PLIPPEG.27: 6 residues within 4Å:- Chain A: E.42
- Chain D: G.47, R.68, P.69, R.82, R.84
Ligand excluded by PLIPPEG.28: 9 residues within 4Å:- Chain A: P.29, D.44, P.46, P.83
- Chain D: P.29, D.44, P.46, P.83
- Ligands: PEG.4
Ligand excluded by PLIPPEG.34: 8 residues within 4Å:- Chain A: T.21, S.22, A.23
- Chain E: P.73, R.75, E.76, M.77
- Ligands: NA.40
Ligand excluded by PLIPPEG.35: 6 residues within 4Å:- Chain E: G.47, R.68, P.69, R.82, R.84
- Chain H: E.42
Ligand excluded by PLIPPEG.36: 9 residues within 4Å:- Chain E: P.29, D.44, P.46, P.83
- Chain H: P.29, D.44, P.46, P.83
- Ligands: PEG.60
Ligand excluded by PLIPPEG.42: 8 residues within 4Å:- Chain D: T.21, S.22, A.23
- Chain F: P.73, R.75, E.76, M.77
- Ligands: NA.48
Ligand excluded by PLIPPEG.43: 6 residues within 4Å:- Chain F: G.47, R.68, P.69, R.82, R.84
- Chain G: E.42
Ligand excluded by PLIPPEG.44: 9 residues within 4Å:- Chain F: P.29, D.44, P.46, P.83
- Chain G: P.29, D.44, P.46, P.83
- Ligands: PEG.52
Ligand excluded by PLIPPEG.50: 8 residues within 4Å:- Chain B: T.21, S.22, A.23
- Chain G: P.73, R.75, E.76, M.77
- Ligands: NA.56
Ligand excluded by PLIPPEG.51: 6 residues within 4Å:- Chain F: E.42
- Chain G: G.47, R.68, P.69, R.82, R.84
Ligand excluded by PLIPPEG.52: 9 residues within 4Å:- Chain F: P.29, D.44, P.46, P.83
- Chain G: P.29, D.44, P.46, P.83
- Ligands: PEG.44
Ligand excluded by PLIPPEG.58: 8 residues within 4Å:- Chain C: T.21, S.22, A.23
- Chain H: P.73, R.75, E.76, M.77
- Ligands: NA.64
Ligand excluded by PLIPPEG.59: 6 residues within 4Å:- Chain E: E.42
- Chain H: G.47, R.68, P.69, R.82, R.84
Ligand excluded by PLIPPEG.60: 9 residues within 4Å:- Chain E: P.29, D.44, P.46, P.83
- Chain H: P.29, D.44, P.46, P.83
- Ligands: PEG.36
Ligand excluded by PLIPPEG.66: 8 residues within 4Å:- Chain E: T.21, S.22, A.23
- Chain I: P.73, R.75, E.76, M.77
- Ligands: NA.72
Ligand excluded by PLIPPEG.67: 6 residues within 4Å:- Chain I: G.47, R.68, P.69, R.82, R.84
- Chain L: E.42
Ligand excluded by PLIPPEG.68: 9 residues within 4Å:- Chain I: P.29, D.44, P.46, P.83
- Chain L: P.29, D.44, P.46, P.83
- Ligands: PEG.92
Ligand excluded by PLIPPEG.74: 8 residues within 4Å:- Chain H: T.21, S.22, A.23
- Chain J: P.73, R.75, E.76, M.77
- Ligands: NA.80
Ligand excluded by PLIPPEG.75: 6 residues within 4Å:- Chain J: G.47, R.68, P.69, R.82, R.84
- Chain K: E.42
Ligand excluded by PLIPPEG.76: 9 residues within 4Å:- Chain J: P.29, D.44, P.46, P.83
- Chain K: P.29, D.44, P.46, P.83
- Ligands: PEG.84
Ligand excluded by PLIPPEG.82: 8 residues within 4Å:- Chain F: T.21, S.22, A.23
- Chain K: P.73, R.75, E.76, M.77
- Ligands: NA.88
Ligand excluded by PLIPPEG.83: 6 residues within 4Å:- Chain J: E.42
- Chain K: G.47, R.68, P.69, R.82, R.84
Ligand excluded by PLIPPEG.84: 9 residues within 4Å:- Chain J: P.29, D.44, P.46, P.83
- Chain K: P.29, D.44, P.46, P.83
- Ligands: PEG.76
Ligand excluded by PLIPPEG.90: 8 residues within 4Å:- Chain G: T.21, S.22, A.23
- Chain L: P.73, R.75, E.76, M.77
- Ligands: NA.96
Ligand excluded by PLIPPEG.91: 6 residues within 4Å:- Chain I: E.42
- Chain L: G.47, R.68, P.69, R.82, R.84
Ligand excluded by PLIPPEG.92: 9 residues within 4Å:- Chain I: P.29, D.44, P.46, P.83
- Chain L: P.29, D.44, P.46, P.83
- Ligands: PEG.68
Ligand excluded by PLIP- 12 x PRO: PROLINE(Non-covalent)
PRO.5: 2 residues within 4Å:- Chain A: R.124, K.125
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:R.124, A:R.124, A:K.125, P.5
- Salt bridges: A:R.124
PRO.13: 2 residues within 4Å:- Chain B: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain B- Hydrogen bonds: P.13, B:R.124, B:R.124, B:K.125
- Salt bridges: B:R.124
PRO.21: 2 residues within 4Å:- Chain C: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain C- Hydrogen bonds: P.21, C:R.124, C:R.124, C:K.125
- Salt bridges: C:R.124
PRO.29: 2 residues within 4Å:- Chain D: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain D- Hydrogen bonds: P.29, D:R.124, D:R.124, D:K.125
- Salt bridges: D:R.124
PRO.37: 2 residues within 4Å:- Chain E: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain E- Hydrogen bonds: P.37, E:R.124, E:R.124, E:K.125
- Salt bridges: E:R.124
PRO.45: 2 residues within 4Å:- Chain F: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain F- Hydrogen bonds: P.45, F:R.124, F:R.124, F:K.125
- Salt bridges: F:R.124
PRO.53: 2 residues within 4Å:- Chain G: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain G- Hydrogen bonds: P.53, G:R.124, G:R.124, G:K.125
- Salt bridges: G:R.124
PRO.61: 2 residues within 4Å:- Chain H: R.124, K.125
5 PLIP interactions:4 interactions with chain H, 1 Ligand-Ligand interactions- Hydrogen bonds: H:R.124, H:R.124, H:K.125, P.61
- Salt bridges: H:R.124
PRO.69: 2 residues within 4Å:- Chain I: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain I- Hydrogen bonds: P.69, I:R.124, I:R.124, I:K.125
- Salt bridges: I:R.124
PRO.77: 2 residues within 4Å:- Chain J: R.124, K.125
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain J- Hydrogen bonds: P.77, J:R.124, J:R.124, J:K.125
- Salt bridges: J:R.124
PRO.85: 2 residues within 4Å:- Chain K: R.124, K.125
5 PLIP interactions:4 interactions with chain K, 1 Ligand-Ligand interactions- Hydrogen bonds: K:R.124, K:R.124, K:K.125, P.85
- Salt bridges: K:R.124
PRO.93: 2 residues within 4Å:- Chain L: R.124, K.125
5 PLIP interactions:4 interactions with chain L, 1 Ligand-Ligand interactions- Hydrogen bonds: L:R.124, L:R.124, L:K.125, P.93
- Salt bridges: L:R.124
- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 1 residues within 4Å:- Chain A: L.19
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: R.75, E.76
Ligand excluded by PLIPCL.14: 1 residues within 4Å:- Chain B: L.19
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain B: R.75, E.76
Ligand excluded by PLIPCL.22: 1 residues within 4Å:- Chain C: L.19
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain C: R.75, E.76
Ligand excluded by PLIPCL.30: 1 residues within 4Å:- Chain D: L.19
Ligand excluded by PLIPCL.31: 2 residues within 4Å:- Chain D: R.75, E.76
Ligand excluded by PLIPCL.38: 1 residues within 4Å:- Chain E: L.19
Ligand excluded by PLIPCL.39: 2 residues within 4Å:- Chain E: R.75, E.76
Ligand excluded by PLIPCL.46: 1 residues within 4Å:- Chain F: L.19
Ligand excluded by PLIPCL.47: 2 residues within 4Å:- Chain F: R.75, E.76
Ligand excluded by PLIPCL.54: 1 residues within 4Å:- Chain G: L.19
Ligand excluded by PLIPCL.55: 2 residues within 4Å:- Chain G: R.75, E.76
Ligand excluded by PLIPCL.62: 1 residues within 4Å:- Chain H: L.19
Ligand excluded by PLIPCL.63: 2 residues within 4Å:- Chain H: R.75, E.76
Ligand excluded by PLIPCL.70: 1 residues within 4Å:- Chain I: L.19
Ligand excluded by PLIPCL.71: 2 residues within 4Å:- Chain I: R.75, E.76
Ligand excluded by PLIPCL.78: 1 residues within 4Å:- Chain J: L.19
Ligand excluded by PLIPCL.79: 2 residues within 4Å:- Chain J: R.75, E.76
Ligand excluded by PLIPCL.86: 1 residues within 4Å:- Chain K: L.19
Ligand excluded by PLIPCL.87: 2 residues within 4Å:- Chain K: R.75, E.76
Ligand excluded by PLIPCL.94: 1 residues within 4Å:- Chain L: L.19
Ligand excluded by PLIPCL.95: 2 residues within 4Å:- Chain L: R.75, E.76
Ligand excluded by PLIP- 12 x NA: SODIUM ION(Non-functional Binders)
NA.8: 1 residues within 4Å:- Ligands: PEG.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.80, A:S.80
NA.16: 1 residues within 4Å:- Ligands: PEG.10
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.80, B:S.80
NA.24: 1 residues within 4Å:- Ligands: PEG.18
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.80
NA.32: 1 residues within 4Å:- Ligands: PEG.26
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.80
NA.40: 1 residues within 4Å:- Ligands: PEG.34
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:S.80, E:S.80
NA.48: 1 residues within 4Å:- Ligands: PEG.42
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:S.80, F:S.80
NA.56: 1 residues within 4Å:- Ligands: PEG.50
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:S.80
NA.64: 1 residues within 4Å:- Ligands: PEG.58
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:S.80, H:S.80
NA.72: 1 residues within 4Å:- Ligands: PEG.66
2 PLIP interactions:2 interactions with chain I- Hydrogen bonds: I:S.80, I:S.80
NA.80: 1 residues within 4Å:- Ligands: PEG.74
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:S.80, J:S.80
NA.88: 1 residues within 4Å:- Ligands: PEG.82
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:S.80, K:S.80
NA.96: 1 residues within 4Å:- Ligands: PEG.90
2 PLIP interactions:2 interactions with chain L- Hydrogen bonds: L:S.80, L:S.80
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bhandari, S. et al., Dodecameric structure of a small heat shock protein from Mycobacterium marinum M. Proteins (2019)
- Release Date
- 2019-01-30
- Peptides
- Molecular chaperone (Small heat shock protein): ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.81 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x GLY- ARG- LEU- LEU: GLY-ARG-LEU-LEU(Non-covalent)
- 36 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 12 x PRO: PROLINE(Non-covalent)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bhandari, S. et al., Dodecameric structure of a small heat shock protein from Mycobacterium marinum M. Proteins (2019)
- Release Date
- 2019-01-30
- Peptides
- Molecular chaperone (Small heat shock protein): ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
A