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SMTL ID : 5zso.1
SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.70 Å
Oligo State
homo-dimer
Ligands
2 x
PEG
:
DI(HYDROXYETHYL)ETHER
(Non-functional Binders)
PEG.1:
4 residues within 4Å:
Chain A:
H.56
,
E.255
,
K.268
,
W.272
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:H.56
Water bridges:
A:K.268
PEG.3:
4 residues within 4Å:
Chain B:
H.56
,
E.255
,
K.268
,
W.272
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:H.56
Water bridges:
B:K.268
2 x
C6P
:
N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
(Non-covalent)
C6P.2:
20 residues within 4Å:
Chain A:
A.31
,
A.32
,
T.95
,
T.96
,
H.124
,
V.174
,
N.176
,
D.201
,
A.203
,
Q.204
,
S.224
,
H.226
,
K.227
,
R.359
,
C.364
,
R.379
Chain B:
N.54
,
R.57
,
G.277
,
T.278
19
PLIP interactions
:
15 interactions with chain A
,
4 interactions with chain B
Hydrogen bonds:
A:T.95
,
A:T.96
,
A:H.124
,
A:N.176
,
A:Q.204
,
A:S.224
,
A:K.227
,
B:T.278
,
B:T.278
,
B:T.278
Water bridges:
A:T.96
,
A:T.97
,
B:R.57
Salt bridges:
A:H.226
,
A:K.227
,
A:K.227
,
A:R.359
,
A:R.379
pi-Stacking:
A:H.124
C6P.4:
20 residues within 4Å:
Chain A:
N.54
,
R.57
,
G.277
,
T.278
Chain B:
A.31
,
A.32
,
T.95
,
T.96
,
H.124
,
V.174
,
N.176
,
D.201
,
A.203
,
Q.204
,
S.224
,
H.226
,
K.227
,
R.359
,
C.364
,
R.379
19
PLIP interactions
:
15 interactions with chain B
,
4 interactions with chain A
Hydrogen bonds:
B:T.95
,
B:T.96
,
B:T.96
,
B:H.124
,
B:N.176
,
B:Q.204
,
B:S.224
,
B:K.227
,
A:T.278
,
A:T.278
Water bridges:
B:T.97
,
A:R.57
,
A:T.278
Salt bridges:
B:H.226
,
B:K.227
,
B:K.227
,
B:R.359
,
B:R.379
pi-Stacking:
B:H.124
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Nakamura, R. et al., Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J. (2020)
Release Date
2019-05-01
Peptides
Cysteine desulfurase SufS:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Cysteine desulfurase SufS
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