SMTL ID : 5zso.1

SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: H.56, E.255, K.268, W.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.56 Water bridges: A:K.268 PEG.3: 4 residues within 4Å: Chain B: H.56, E.255, K.268, W.272 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.56 Water bridges: B:K.268

2 x C6P: N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE(Non-covalent)

C6P.2: 20 residues within 4Å: Chain A: A.31, A.32, T.95, T.96, H.124, V.174, N.176, D.201, A.203, Q.204, S.224, H.226, K.227, R.359, C.364, R.379 Chain B: N.54, R.57, G.277, T.278 19 PLIP interactions: 15 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.95, A:T.96, A:H.124, A:N.176, A:Q.204, A:S.224, A:K.227, B:T.278, B:T.278, B:T.278 Water bridges: A:T.96, A:T.97, B:R.57 Salt bridges: A:H.226, A:K.227, A:K.227, A:R.359, A:R.379 pi-Stacking: A:H.124 C6P.4: 20 residues within 4Å: Chain A: N.54, R.57, G.277, T.278 Chain B: A.31, A.32, T.95, T.96, H.124, V.174, N.176, D.201, A.203, Q.204, S.224, H.226, K.227, R.359, C.364, R.379 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:T.95, B:T.96, B:T.96, B:H.124, B:N.176, B:Q.204, B:S.224, B:K.227, A:T.278, A:T.278 Water bridges: B:T.97, A:R.57, A:T.278 Salt bridges: B:H.226, B:K.227, B:K.227, B:R.359, B:R.379 pi-Stacking: B:H.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, R. et al., Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J. (2020)

Release Date

2019-05-01

Peptides

Cysteine desulfurase SufS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cysteine desulfurase SufS

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