SMTL ID : 5zty.1

Crystal structure of human G protein coupled receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x 9JU: N-(adamantan-1-yl)-1-(5-hydroxypentyl)-4-methyl-5-phenyl-1H-pyrazole-3-carboxamide(Non-covalent)

9JU.1: 17 residues within 4Å: Chain A: F.86, S.89, F.90, F.93, I.109, V.112, T.113, F.116, F.182, I.185, Y.189, W.193, W.405, L.409, M.412, S.432, C.435 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.86, A:F.93, A:I.109, A:F.182, A:F.182, A:L.409 Hydrogen bonds: A:T.113 Water bridges: A:T.113, A:Y.189 pi-Stacking: A:F.116, A:W.405

1 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 3 residues within 4Å: Chain A: L.150, G.154, W.157 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.157, A:W.157

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 3 residues within 4Å: Chain A: T.145, G.147, R.148 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.148 OLC.4: 5 residues within 4Å: Chain A: F.406, L.409, A.410, A.413 Ligands: OLC.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.406 OLC.5: 3 residues within 4Å: Chain A: L.402, F.406 Ligands: OLC.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.406

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: G.250, H.251, L.252, F.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.252 PEG.7: 4 residues within 4Å: Chain A: Y.131, Y.206, T.207, H.210 No protein-ligand interaction detected (PLIP)

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.8: 2 residues within 4Å: Chain A: R.296, R.300 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.296, A:R.300 EPE.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.10: 6 residues within 4Å: Chain A: R.272, T.279, D.281, E.282, K.285 Ligands: SO4.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.282 Water bridges: A:K.285, A:K.285

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 4 residues within 4Å: Chain A: T.362, P.363, N.364, R.365 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.364, A:R.365 Water bridges: A:R.368, A:R.368, A:R.368 SO4.12: 5 residues within 4Å: Chain A: F.334, T.335, N.336, S.337, N.352 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.335, A:N.336, A:N.336, A:S.337, A:N.352 SO4.13: 2 residues within 4Å: Chain A: K.285 Ligands: PG4.10 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.285, A:K.285 Salt bridges: A:K.285 SO4.14: 2 residues within 4Å: Chain A: R.228, K.280 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.228, A:K.280 SO4.15: 3 residues within 4Å: Chain A: R.228, L.233, R.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.233 Water bridges: A:R.234, A:R.234 Salt bridges: A:R.228, A:R.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Crystal Structure of the Human Cannabinoid Receptor CB2. Cell (2019)

Release Date

2019-01-30

Peptides

G protein coupled receptor,T4 lysozyme,G protein coupled receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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G protein coupled receptor,T4 lysozyme,G protein coupled receptor