SMTL ID : 5zug.1

Structure of the bacterial acetate channel SatP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

3 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.1: 15 residues within 4Å: Chain A: N.10, A.12, L.16, F.19, Q.52, N.64, F.66, G.67, A.70, F.71, Y.74, L.126, V.129, F.130, E.173 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.16, A:F.19, A:F.66, A:A.70, A:F.71, A:F.71, A:F.71, A:Y.74, A:L.126, A:V.129, A:F.130 Hydrogen bonds: A:N.10, A:N.64, A:E.173 BNG.2: 13 residues within 4Å: Chain C: A.12, L.16, Q.52, N.64, F.66, G.67, A.70, F.71, Y.74, L.126, F.130, E.173 Chain F: Q.178 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:L.16, C:F.66, C:A.70, C:F.71, C:F.71, C:F.71, C:Y.74, C:Y.74, C:L.126, C:F.130, C:F.130 Hydrogen bonds: C:N.64 BNG.3: 11 residues within 4Å: Chain B: Q.178 Chain E: F.19, Q.52, N.64, F.66, A.70, F.71, Y.74, L.126, F.130, E.173 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain B Hydrophobic interactions: E:F.19, E:A.70, E:F.71, E:F.71, E:Y.74, E:F.130 Hydrogen bonds: E:N.64, E:E.173, B:Q.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, P. et al., Crystal structure of the bacterial acetate transporter SatP reveals that it forms a hexameric channel. J. Biol. Chem. (2018)

Release Date

2018-11-21

Peptides

Succinate-acetate/proton symporter SatP: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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Succinate-acetate/proton symporter SatP