SMTL ID : 5zun.1

Crystal structure of human monoacylglycerol lipase in complex with compound 3l

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x 9JX: (4R)-1-(2'-chloro[1,1'-biphenyl]-3-yl)-4-[4-(1,3-thiazole-2-carbonyl)piperazin-1-yl]pyrrolidin-2-one(Non-covalent)

9JX.1: 24 residues within 4Å: Chain A: G.52, A.53, E.55, R.59, M.90, H.123, S.124, M.125, G.179, P.180, I.181, S.183, L.186, S.187, E.192, V.193, Y.196, L.207, L.215, L.243, H.271, V.272, K.275 Ligands: PG4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.53, A:I.181, A:L.207, A:L.215, A:L.243 Hydrogen bonds: A:A.53, A:R.59, A:M.125 Salt bridges: A:E.55

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 8 residues within 4Å: Chain A: A.153, S.157, P.180, L.207, L.215, L.216 Ligands: 9JX.1, EDO.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.182, A:D.182

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: P.180, I.181, D.182, V.185, L.186, R.242 Ligands: PG4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.180, A:D.182 EDO.4: 5 residues within 4Å: Chain A: E.192, H.274, K.275, T.281, F.285 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.192, A:K.275 Water bridges: A:R.59, A:E.62, A:K.275 EDO.5: 6 residues within 4Å: Chain A: P.13, Q.14, G.83, R.89, L.201, I.202 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.14, A:R.89 Water bridges: A:G.54, A:G.83 EDO.6: 2 residues within 4Å: Chain A: I.16, L.201 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.84 EDO.7: 5 residues within 4Å: Chain A: L.24, Y.36, H.105, S.108, M.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.108 Water bridges: A:S.108 EDO.8: 5 residues within 4Å: Chain A: H.56, G.58, R.59, I.195, D.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.56, A:R.59, A:D.199 Water bridges: A:K.275 EDO.9: 5 residues within 4Å: Chain A: R.11, T.12, P.13, E.86, G.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.12, A:G.87 EDO.10: 3 residues within 4Å: Chain A: N.217, R.221, R.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.221, A:R.224, A:R.224

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 3 residues within 4Å: Chain A: H.96, L.132, R.221 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aida, J. et al., Design, Synthesis, and Evaluation of Piperazinyl Pyrrolidin-2-ones as a Novel Series of Reversible Monoacylglycerol Lipase Inhibitors. J. Med. Chem. (2018)

Release Date

2018-10-17

Peptides

Monoglyceride lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Monoglyceride lipase