SMTL ID : 5zvb.1 (1 other biounit)

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x DA- DT- DT- DT- DT- DC- DA- DA- DT: DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*T)-3')(Non-covalent)

DA-DT-DT-DT-DT-DC-DA-DA-DT.1: 9 residues within 4Å: Chain A: Y.169, K.188, P.189, W.190, K.191, G.192, L.193, K.194, Y.195 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.85, C.116, C.119 Ligands: CAC.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.85, A:C.116, A:C.119

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 11 residues within 4Å: Chain A: T.52, N.76, H.85, E.87, W.113, S.114, P.115, C.116, C.119, Y.143 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.52, A:N.76, A:A.86, A:E.87, A:C.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, C. et al., Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA. Chin.J.Chem. (2018)

Release Date

2018-11-21

Peptides

APEBEC3F/ssDNA-T9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

APEBEC3F/ssDNA-T9

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