SMTL ID : 5zw4.1

Crystal structure of tRNA bound TrmR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: D.104, I.107, H.108, V.109 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.107, A:V.109, A:V.109 Water bridges: A:D.104, A:D.104

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 21 residues within 4Å: Chain A: P.36, I.37, M.38, E.60, G.62, T.63, A.64, Y.67, S.68, I.84, E.85, R.86, N.87, R.90, G.112, D.113, A.114, D.133, A.134, A.135, F.142 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.64 Hydrogen bonds: A:M.38, A:T.63, A:A.64, A:Y.67, A:S.68, A:S.68, A:S.68, A:R.86, A:R.90, A:D.113, A:A.114, A:A.135 Water bridges: A:A.69, A:R.86, A:R.86, A:R.86 Salt bridges: A:D.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ryu, H. et al., Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine. Nucleic Acids Res. (2018)

Release Date

2018-07-11

Peptides

Putative O-methyltransferase YrrM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative O-methyltransferase YrrM

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