- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)
O4B.2: 4 residues within 4Å:- Chain A: V.23, E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.44
O4B.3: 5 residues within 4Å:- Chain A: F.273, K.275, Q.279, F.280
- Ligands: O4B.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.275
O4B.8: 4 residues within 4Å:- Chain B: V.23, E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.44
O4B.9: 5 residues within 4Å:- Chain B: F.273, K.275, Q.279, F.280
- Ligands: O4B.21
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.275
O4B.14: 4 residues within 4Å:- Chain C: V.23, E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.44
O4B.15: 5 residues within 4Å:- Chain C: F.273, K.275, Q.279, F.280
- Ligands: O4B.3
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.275
O4B.20: 4 residues within 4Å:- Chain D: V.23, E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.44
O4B.21: 5 residues within 4Å:- Chain D: F.273, K.275, Q.279, F.280
- Ligands: O4B.9
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.275
- 4 x MLA: MALONIC ACID(Non-covalent)
MLA.4: 9 residues within 4Å:- Chain A: N.125, F.237, M.241, E.244, F.364, S.365, G.366
- Ligands: FAD.1, PRO.6
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.237
- Hydrogen bonds: A:N.125, A:S.365, A:G.366
MLA.10: 9 residues within 4Å:- Chain B: N.125, F.237, M.241, E.244, F.364, S.365, G.366
- Ligands: FAD.7, PRO.12
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.237
- Hydrogen bonds: B:N.125, B:S.365, B:G.366
MLA.16: 9 residues within 4Å:- Chain C: N.125, F.237, M.241, E.244, F.364, S.365, G.366
- Ligands: FAD.13, PRO.18
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.237
- Hydrogen bonds: C:N.125, C:S.365, C:G.366
MLA.22: 9 residues within 4Å:- Chain D: N.125, F.237, M.241, E.244, F.364, S.365, G.366
- Ligands: FAD.19, PRO.24
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:F.237
- Hydrogen bonds: D:N.125, D:S.365, D:G.366
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 3 residues within 4Å:- Chain A: Q.281
- Chain C: Q.281
- Ligands: CL.17
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain B: Q.281
- Chain D: Q.281
- Ligands: CL.23
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain A: Q.281
- Chain C: Q.281
- Ligands: CL.5
Ligand excluded by PLIPCL.23: 3 residues within 4Å:- Chain B: Q.281
- Chain D: Q.281
- Ligands: CL.11
Ligand excluded by PLIP- 4 x PRO: PROLINE(Non-covalent)
PRO.6: 11 residues within 4Å:- Chain A: G.133, S.134, I.136, Y.137, F.237, H.238, M.241, S.365, G.366
- Ligands: FAD.1, MLA.4
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.237
- Hydrogen bonds: A:Y.137
- Water bridges: A:K.245, A:K.245, A:S.365
- Salt bridges: A:H.238
PRO.12: 11 residues within 4Å:- Chain B: G.133, S.134, I.136, Y.137, F.237, H.238, M.241, S.365, G.366
- Ligands: FAD.7, MLA.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.237
- Hydrogen bonds: B:Y.137
- Water bridges: B:K.245, B:K.245, B:S.365
- Salt bridges: B:H.238
PRO.18: 11 residues within 4Å:- Chain C: G.133, S.134, I.136, Y.137, F.237, H.238, M.241, S.365, G.366
- Ligands: FAD.13, MLA.16
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.237
- Water bridges: C:K.245, C:K.245, C:S.365
- Salt bridges: C:H.238
PRO.24: 11 residues within 4Å:- Chain D: G.133, S.134, I.136, Y.137, F.237, H.238, M.241, S.365, G.366
- Ligands: FAD.19, MLA.22
5 PLIP interactions:5 interactions with chain D,- Hydrophobic interactions: D:F.237
- Water bridges: D:K.245, D:K.245, D:S.365
- Salt bridges: D:H.238
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, C.-C. et al., Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis. Chembiochem (2019)
- Release Date
- 2018-09-05
- Peptides
- L-prolyl-[peptidyl-carrier protein] dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)
- 4 x MLA: MALONIC ACID(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x PRO: PROLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, C.-C. et al., Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis. Chembiochem (2019)
- Release Date
- 2018-09-05
- Peptides
- L-prolyl-[peptidyl-carrier protein] dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A