SMTL ID : 5zwp.1

Crystal structure of the delta-class glutathione transferase from Musca domestica

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 12 residues within 4Å: Chain A: P.11, L.33, H.38, H.50, T.51, I.52, P.53, E.64, S.65, R.66, M.101 Ligands: FMT.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:I.52, A:I.52, A:E.64, A:E.64, A:S.65, A:R.66 Water bridges: A:H.38, A:I.52, A:R.66, A:R.66, A:R.66 Salt bridges: A:H.38, A:H.50, A:R.66 GSH.8: 11 residues within 4Å: Chain B: P.11, L.33, H.38, H.50, T.51, I.52, P.53, E.64, S.65, R.66, M.101 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:I.52, B:I.52, B:E.64, B:E.64, B:S.65, B:R.66 Water bridges: B:R.66, B:R.66, B:R.66 Salt bridges: B:H.38, B:H.50, B:R.66

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: P.11, Y.105, Y.113 Ligands: GSH.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.10 FMT.3: 5 residues within 4Å: Chain A: M.101, G.102 Chain B: M.101, G.102, K.106 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:K.106, B:G.102 FMT.4: 4 residues within 4Å: Chain A: T.103, K.106, S.107, K.129 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.110 FMT.5: 3 residues within 4Å: Chain A: T.139, F.140, K.142 No protein-ligand interaction detected (PLIP) FMT.6: 2 residues within 4Å: Chain A: W.193, W.197 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.197 FMT.7: 4 residues within 4Å: Chain A: K.89, G.149, D.150, S.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.150 Water bridges: A:S.151 FMT.9: 4 residues within 4Å: Chain B: L.6, N.32, L.33, Q.34 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.33, B:Q.34 Water bridges: B:Y.206 FMT.10: 5 residues within 4Å: Chain A: P.48, W.63 Chain B: R.96, T.139, F.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.96, B:R.96, B:T.139 FMT.11: 4 residues within 4Å: Chain B: K.89, G.149, D.150, S.151 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.150 Water bridges: B:S.151 FMT.12: 2 residues within 4Å: Chain B: W.193, W.197 1 PLIP interactions: 1 interactions with chain B Water bridges: B:W.197 FMT.13: 3 residues within 4Å: Chain B: M.1, I.24, Y.76 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sue, M. et al., Crystal structure of the delta-class glutathione transferase in Musca domestica. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-06-13

Peptides

Glutathione S-transferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase 1